molecule_copies ( molecule,  matrices )

show_multiscale_model_dialog ()

fully_selected_pieces ( plist )

A fully selected piece is one that is selected or has at least one child and all children are fully selected.

subtract_lists ( list1,  list2 )

numbered_xforms ( matrices )

get_atom_coordinates ( atoms,  coords )

find_pieces (
        pieces,
        piece_type,
        already_checked=None,
        )

multiscale_model_dialog ( create=False )

multimer_chain_group (
        multimer_name,
        group_name,
        xforms,
        lan_molecules,
        chain_ids,
        chain_colors,
        surfacer,
        )

make_chain_groups (
        name_prefix,
        chain_names,
        mcopies,
        color=None,
        chain_colors=[],
        )

modeled_molecules ( pieces,  mtable=None )

multimeric_molecule_pieces (
        molecule,
        surfacer,
        xforms,
        )

are_all_atoms_ca ( atoms )

hide_molecule ( m )

copy_molecule_from_path (
        path,
        file_type,
        default_file_type,
        prefixable_type,
        file_model_number,
        )

transformed_vertices ( varray,  xform )

varray is an N by 3 array of xyz positions to be transformed using a Chimera xform.

float_variable_value ( v,  default=None )

chain_pieces (
        chains,
        chain_colors,
        xform,
        surfacer,
        )

make_group ( name,  plist )

integer_variable_value ( v,  default=None )

make_lan_molecules ( molecule,  n )

chimera_color ( rgba )

find_fully_selected_pieces ( p,  fstable )

random_colors ( n,  seed=None )

parent_pieces ( plist )

make_chain_group (
        name,
        chain_names,
        mcopies,
        chain_colors,
        )

Model_Piece

Base class for pieces of multiscale model.

Stop_Dialog

Chain_Piece

LAN_Molecule

Load As Needed Molecule.

LAN_Chain

Group_Piece

MultiScale_Model_Dialog

Chain_Surfacer

ChimeraExtension.py

nearby.py

session.py

surface.py